pedviz.rpedviz
Class RPedviz

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Window
              java.awt.Frame
                  javax.swing.JFrame
                      pedviz.rpedviz.RPedviz

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

Direct Known Subclasses:

RPedviz2D, RPedviz3D

public abstract class RPedviz
extends javax.swing.JFrame
implements java.awt.event.ActionListener

This abstract class defines the interface between R and Pedviz.

Author:

lukas forer

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.BaselineResizeBehavior

Field Summary

Fields inherited from class javax.swing.JFrame

EXIT_ON_CLOSE

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

RPedviz(java.lang.String title)
Constructs a new RPedviz object.

Method Summary

void	actionPerformed(java.awt.event.ActionEvent arg0)
void	addColorRule(java.lang.String[] trait, java.lang.String[] value) Adds a multiple ColorRule.
void	addColorRule(java.lang.String[] trait, java.lang.String[] value, int[] r, int[] g, int[] b) Adds a multiple ColorRule.
void	addColorRule(java.lang.String trait, java.lang.String value, int r, int g, int b) Adds a ColorRule.
void	addRule(Rule rule) Adds a rule.
void	plot(java.lang.String format, java.lang.String[] args) Plots the pedigree without hints and with the highlighter-toolbar.
void	plot(java.lang.String format, java.lang.String[] args, boolean highlighter) Plots the pedigree without hints.
void	plot(java.lang.String format, java.lang.String[] args, java.lang.String[] hints) Plots the pedigree with hints and with the highlighter-toolbar.
void	plot(java.lang.String format, java.lang.String seperator, java.lang.String[] args) Plots the pedigree without hints and with the highlighter-toolbar.
void	plot(java.lang.String format, java.lang.String seperator, java.lang.String[] args, boolean highlighter) Plots the pedigree without hints.
void	plot(java.lang.String format, java.lang.String seperator, java.lang.String[] args, java.lang.String[] hints) Plots the pedigree with hints and with the highlighter-toolbar.
abstract void	plot(java.lang.String format, java.lang.String seperator, java.lang.String[] args, java.lang.String[] hints, boolean highlighter) Plots the pedigree with hints.

Methods inherited from class javax.swing.JFrame

getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOwnedWindows, getOwner, getOwnerlessWindows, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, postEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, dispatchEvent, enable, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocusInWindow, resize, resize, setBackground, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Constructor Detail

RPedviz

public RPedviz(java.lang.String title)

Constructs a new RPedviz object.

Method Detail

plot

public abstract void plot(java.lang.String format,
                          java.lang.String seperator,
                          java.lang.String[] args,
                          java.lang.String[] hints,
                          boolean highlighter)

Plots the pedigree with hints.

Parameters:

format - defines the column positions ("PID;MOM;DAD;SEX;TRAIT1;...").

seperator - character which separates the values.

args - pedigree data. Every string of the array contains informations about an idividum.

hints - hint attributes.

highlighter - shows or hides the highlighter-toolbar.

plot

public void plot(java.lang.String format,
                 java.lang.String[] args,
                 boolean highlighter)

Plots the pedigree without hints. The default seperator is ";".

Parameters:

format - defines the column positions ("PID;MOM;DAD;SEX;TRAIT1;...").

args - pedigree data. Every string of the array contains informations about an idividum.

highlighter - shows or hides the highlighter-toolbar.

plot

public void plot(java.lang.String format,
                 java.lang.String seperator,
                 java.lang.String[] args,
                 boolean highlighter)

Plots the pedigree without hints.

Parameters:

format - defines the column positions ("PID;MOM;DAD;SEX;TRAIT1;...").

seperator - character which separates the values.

args - pedigree data. Every string of the array contains informations about an idividum.

highlighter - shows or hides the highlighter-toolbar.

plot

public void plot(java.lang.String format,
                 java.lang.String[] args)

Plots the pedigree without hints and with the highlighter-toolbar. The default seperator is ";".

Parameters:

format - defines the column positions ("PID;MOM;DAD;SEX;TRAIT1;...").

args - pedigree data. Every string of the array contains informations about an idividum.

plot

public void plot(java.lang.String format,
                 java.lang.String seperator,
                 java.lang.String[] args)

Plots the pedigree without hints and with the highlighter-toolbar.

Parameters:

format - defines the column positions ("PID;MOM;DAD;SEX;TRAIT1;...").

seperator - character which separates the values.

args - pedigree data. Every string of the array contains informations about an idividum.

plot

public void plot(java.lang.String format,
                 java.lang.String[] args,
                 java.lang.String[] hints)

Plots the pedigree with hints and with the highlighter-toolbar. The default seperator is ";".

Parameters:

format - defines the column positions ("PID;MOM;DAD;SEX;TRAIT1;...").

args - pedigree data. Every string of the array contains informations about an idividum.

hints - hint attributes.

plot

public void plot(java.lang.String format,
                 java.lang.String seperator,
                 java.lang.String[] args,
                 java.lang.String[] hints)

Plots the pedigree with hints and with the highlighter-toolbar.

Parameters:

format - defines the column positions ("PID;MOM;DAD;SEX;TRAIT1;...").

seperator - character which separates the values.

args - pedigree data. Every string of the array contains informations about an idividum.

hints - hint attributes.

addRule

public void addRule(Rule rule)

Adds a rule.

Parameters:

rule - Rule

addColorRule

public void addColorRule(java.lang.String trait,
                         java.lang.String value,
                         int r,
                         int g,
                         int b)

Adds a ColorRule.

Parameters:

trait - trait.

value - value.

r - red-value.

g - green-value.

b - blue-value.

addColorRule

public void addColorRule(java.lang.String[] trait,
                         java.lang.String[] value,
                         int[] r,
                         int[] g,
                         int[] b)

Adds a multiple ColorRule.

Parameters:

trait - array of traits.

value - array of values.

r - array of red-values.

g - array of green-values.

b - array of blue-values.

addColorRule

public void addColorRule(java.lang.String[] trait,
                         java.lang.String[] value)

Adds a multiple ColorRule.

Parameters:

trait - array of traits.

value - array of values.

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent arg0)

Specified by:

actionPerformed in interface java.awt.event.ActionListener